Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
Lung
MeSH Description
Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Attributes by original data submitter

Sample

sample_type
tissue
tissue
left lung
sex
female
dev stage
child
age
16 year
donor ID
ENCDO575EGL
lab
Bradley Bernstein, Broad
source
Shin Lin
health state
DM: no; HTN: no; CAD: no

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
23424734
Reads aligned (%)
98.9
Duplicates removed (%)
4.2
Number of peaks
20945 (qval < 1E-05)

hg19

Number of total reads
23424734
Reads aligned (%)
97.9
Duplicates removed (%)
5.2
Number of peaks
21040 (qval < 1E-05)

Base call quality data from DBCLS SRA