Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

sample_type

tissue

tissue

left lung

sex

female

dev stage

child

age

16 year

donor ID

ENCDO575EGL

lab

Bradley Bernstein, Broad

source

Shin Lin

health state

DM: no; HTN: no; CAD: no

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

23424734

Reads aligned (%)

98.9

Duplicates removed (%)

4.2

Number of peaks

20945 (qval < 1E-05)

hg19

Number of total reads

23424734

Reads aligned (%)

97.9

Duplicates removed (%)

5.2

Number of peaks

21040 (qval < 1E-05)